Most of the networkx functions related to nodes return a dictionary, which can also easily be added to our dataframe. One way to represent a graph as a matrix is to place the weight of each edge in one element of the matrix (or a zero if there is no edge). G=networkx.from_pandas_adjacency(df, create_using=networkx.DiGraph()) However, what ends up happening is that the graph object either: (For option A) basically just takes one of the values among the two parallel edges between any two given nodes, and deletes the other one . You can vote up the ones you like or vote down the ones you don't like, and go to the original project or source file by following the links above each example. I'm also not super happy with the image, it isn't publication ready. How do you print the all the edges of a graph with a given adjacency matrix in python? import networkx as nx G = nx.cycle_graph(10) A = nx.adjacency_matrix(G) print(A.todense()) The example begins by importing the required package. We have explained about basic network structure and network creation as well as manipulation using python library networkx. This tutorial is a continuation of that tutorial on further analysis of graph data structures. So, an edge from v 3, to v 1 with a weight of 37 would be represented by A 3,1 = 37, meaning the third row has a 37 in the first column. ... From University of Michigan, Python for Data Science Coursera Specialization. However, you can easily do this with networkx. If you want a pure Python adjacency matrix representation try networkx.convert.to_dict_of_dicts which will return a dictionary-of-dictionaries format that can be addressed as a sparse matrix. Output: Note: The shape of output graph illustration is generated randomly but the number, size and color of nodes will be according to the argument passed in networkx.draw() method. The following are 30 code examples for showing how to use networkx.to_numpy_matrix().These examples are extracted from open source projects. Attention geek! Graph Adjacency Matrix (With code examples in C++, Java and , Adjacency Matrix representation in Python class Graph(object): # Initialize the matrix def __init__(self, size): (The format of your graph is not particularly convenient for use in networkx.) NetworkX是一款Python的开源软件包，用于创造、操作复杂网络，内置了常用的图与复杂网络分析算法，可以方便的进行复杂网络数据分析、仿真建模等工作。功能丰富、简单易用。一、安装pip install networkx二、数据构造新建excel表格，输入邻接矩阵：第一行代表边：a-b ,a-c, a-d三条有向边其余各行 … Calling adjacency_matrix() creates the adjacency matrix from the graph. I can generate a graph in networkx like this: import matplotlib.pyplot as plt import networkx as nx import numpy as np G = nx.from_numpy_matrix(np.matrix(A), create_using=nx.DiGraph) nx.draw(G) plt.show() But I cannot see the weights. The graph contains ten nodes. 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